bioPIXIE is a general system for discovery of biological networks through integration of diverse genome-wide functional data. See the links below for additional information about the system and the genomic data used.
bioPIXIE Manuscript Online Supplementary Material
bioPIXIE Bayesian network for data integration (updated 2.27.2006)
bioPIXIE probabilistic interaction network (updated 2.27.2006)
Functional Genomic Data Sources
- Complete publication list
(includes GRID and BIND interaction data, co-localization data, curated literature, transcription factor binding sites, and gene expression data)
Tools Used
- Genie and SMILE (Bayesian Network Library for C)
- PHP Manual
- MySQL Manual
- Perl
bioPIXIE Manuscript Online Supplementary Material
bioPIXIE Bayesian network for data integration (updated 2.27.2006)
bioPIXIE probabilistic interaction network (updated 2.27.2006)
Functional Genomic Data Sources
- Complete publication list
(includes GRID and BIND interaction data, co-localization data, curated literature, transcription factor binding sites, and gene expression data)
Tools Used
- Genie and SMILE (Bayesian Network Library for C)
- PHP Manual
- MySQL Manual
- Perl
